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PPIs across PubMed

Within the scope of a collaboration with an industrial partner, we parsed the entire PubMed repository in search of protein-protein interactions.

Check our limited preview of our PubMed-wide PPI search application!

[NOTE, April 2016]: This demo application was created using the 2014 PubMed dump as target document collection, and the Nov. 2014 version of BioGrid as gold standard for training the system. We are currently in the process of updating it, using the most recent versions of PubMed and BioGrid.

Furrer, Lenz; Clematide, Simon; Marques, Hernani; Rodriguez‐Esteban, Raul; Romacker, Martin; Rinaldi, Fabio (2014). Collection‐Wide Extraction of Protein‐Protein Interactions. In: 6th International Symposium on Semantic Mining in Biomedicine, Aveiro, Portugal, 6 October 2014 - 7 October 2014, 61-66.